Detailed information of SNP:
|
SNP ID:
sf0706530620(Gbrowse)
Chromosome: chr07 Position: 6530620 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 63.40% | 36.60% |
| All Indica | 794 | 95.34% | 4.66% |
| All Japonica | 480 | 8.75% | 91.25% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 320 | 10.62% | 89.38% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706530620 | A->C | LOC_Os07g11800(LOC_Os07g11800.1) | Non-Synonymous SNP |