Detailed information of SNP:
|
SNP ID:
sf0706546103(Gbrowse)
Chromosome: chr07 Position: 6546103 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 50.91% | 49.09% |
| All Indica | 769 | 82.18% | 17.82% |
| All Japonica | 495 | 1.41% | 98.59% |
| Aus | 64 | 71.88% | 28.12% |
| Indica I | 358 | 83.80% | 16.20% |
| Indica II | 208 | 75.00% | 25.00% |
| Indica Intermediate | 203 | 86.70% | 13.30% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706546103 | T->A | LOC_Os07g11830(LOC_Os07g11830.1) | Synonymous |