Detailed information of SNP:
|
SNP ID:
sf0706546209(Gbrowse)
Chromosome: chr07 Position: 6546209 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 50.58% | 49.42% |
| All Indica | 770 | 19.61% | 80.39% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 63 | 31.75% | 68.25% |
| Indica I | 362 | 18.78% | 81.22% |
| Indica II | 203 | 26.11% | 73.89% |
| Indica Intermediate | 205 | 14.63% | 85.37% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706546209 | G->A | LOC_Os07g11830(LOC_Os07g11830.1) | Non-Synonymous SNP |