Detailed information of SNP:
|
SNP ID:
sf0706561046(Gbrowse)
Chromosome: chr07 Position: 6561046 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 55.66% | 44.34% |
| All Indica | 779 | 87.80% | 12.20% |
| All Japonica | 492 | 4.47% | 95.53% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 367 | 86.65% | 13.35% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 330 | 5.45% | 94.55% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706561046 | C->G | LOC_Os07g11860(LOC_Os07g11860.1) | Synonymous |