Detailed information of SNP:
|
SNP ID:
sf0706561159(Gbrowse)
Chromosome: chr07 Position: 6561159 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 58.08% | 41.92% |
| All Indica | 790 | 91.14% | 8.86% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 371 | 91.37% | 8.63% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 333 | 5.11% | 94.89% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706561159 | T->C | LOC_Os07g11860(LOC_Os07g11860.1) | INTRON |