Detailed information of SNP:
|
SNP ID:
sf0706561213(Gbrowse)
Chromosome: chr07 Position: 6561213 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 58.84% | 41.16% |
| All Indica | 784 | 91.33% | 8.67% |
| All Japonica | 489 | 5.93% | 94.07% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 367 | 91.28% | 8.72% |
| Indica II | 207 | 90.82% | 9.18% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 328 | 7.93% | 92.07% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706561213 | G->A | LOC_Os07g11860(LOC_Os07g11860.1) | INTRON |