Detailed information of SNP:
|
SNP ID:
sf0706562397(Gbrowse)
Chromosome: chr07 Position: 6562397 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 89.15% | 10.85% |
| All Indica | 796 | 96.98% | 3.02% |
| All Japonica | 485 | 74.23% | 25.77% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 328 | 69.51% | 30.49% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706562397 | T->C | LOC_Os07g11860(LOC_Os07g11860.1) | Synonymous |