Detailed information of SNP:
|
SNP ID:
sf0706564905(Gbrowse)
Chromosome: chr07 Position: 6564905 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 53.62% | 46.38% |
| All Indica | 744 | 85.08% | 14.92% |
| All Japonica | 489 | 2.66% | 97.34% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 346 | 82.08% | 17.92% |
| Indica II | 204 | 89.22% | 10.78% |
| Indica Intermediate | 194 | 86.08% | 13.92% |
| Temperate Japonica | 327 | 3.36% | 96.64% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706564905 | A->G | LOC_Os07g11860(LOC_Os07g11860.1) | Synonymous |