Detailed information of SNP:
|
SNP ID:
sf0706566690(Gbrowse)
Chromosome: chr07 Position: 6566690 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 55.72% | 44.28% |
| All Indica | 777 | 86.87% | 13.13% |
| All Japonica | 494 | 6.07% | 93.93% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 359 | 88.30% | 11.70% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 206 | 85.44% | 14.56% |
| Temperate Japonica | 332 | 7.83% | 92.17% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706566690 | A->G | INTERGENIC | None |