Detailed information of SNP:
|
SNP ID:
sf0706566691(Gbrowse)
Chromosome: chr07 Position: 6566691 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 57.61% | 42.39% |
| All Indica | 777 | 89.32% | 10.68% |
| All Japonica | 494 | 6.68% | 93.32% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 357 | 91.04% | 8.96% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 332 | 8.73% | 91.27% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706566691 | T->C | INTERGENIC | None |