Detailed information of SNP:
|
SNP ID:
sf0706604865(Gbrowse)
Chromosome: chr07 Position: 6604865 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 67.97% | 32.03% |
| All Indica | 785 | 52.48% | 47.52% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 369 | 48.24% | 51.76% |
| Indica II | 211 | 64.93% | 35.07% |
| Indica Intermediate | 205 | 47.32% | 52.68% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706604865 | G->C | INTERGENIC | None |