Detailed information of SNP:
|
SNP ID:
sf0706613354(Gbrowse)
Chromosome: chr07 Position: 6613354 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 70.70% | 29.30% |
| All Indica | 774 | 54.91% | 45.09% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 64 | 34.38% | 65.62% |
| Indica I | 365 | 37.81% | 62.19% |
| Indica II | 208 | 83.17% | 16.83% |
| Indica Intermediate | 201 | 56.72% | 43.28% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706613354 | T->A | LOC_Os07g11920(LOC_Os07g11920.1) | INTRON |