Detailed information of SNP:
|
SNP ID:
sf0706616708(Gbrowse)
Chromosome: chr07 Position: 6616708 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 53.29% | 46.71% |
| All Indica | 779 | 26.32% | 73.68% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 371 | 14.29% | 85.71% |
| Indica II | 203 | 48.28% | 51.72% |
| Indica Intermediate | 205 | 26.34% | 73.66% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706616708 | A->G | LOC_Os07g11920(LOC_Os07g11920.1) | INTRON |