Detailed information of SNP:
|
SNP ID:
sf0706622522(Gbrowse)
Chromosome: chr07 Position: 6622522 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 67.80% | 32.20% |
| All Indica | 769 | 51.24% | 48.76% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 357 | 45.94% | 54.06% |
| Indica II | 208 | 66.83% | 33.17% |
| Indica Intermediate | 204 | 44.61% | 55.39% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706622522 | C->T | INTERGENIC | None |