Detailed information of SNP:
|
SNP ID:
sf0706643682(Gbrowse)
Chromosome: chr07 Position: 6643682 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 82.26% | 17.74% |
| All Indica | 790 | 76.58% | 23.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 372 | 70.16% | 29.84% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 206 | 73.30% | 26.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706643682 | A->G | INTERGENIC | None |