Detailed information of SNP:
|
SNP ID:
sf0706670415(Gbrowse)
Chromosome: chr07 Position: 6670415 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.85% | 41.15% |
| All Indica | 796 | 92.84% | 7.16% |
| All Japonica | 493 | 12.17% | 87.83% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 331 | 16.62% | 83.38% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706670415 | T->A | INTERGENIC | None |