Detailed information of SNP:
|
SNP ID:
sf0706706114(Gbrowse)
Chromosome: chr07 Position: 6706114 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 64.64% | 35.36% |
| All Indica | 794 | 96.22% | 3.78% |
| All Japonica | 495 | 12.32% | 87.68% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 333 | 16.52% | 83.48% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706706114 | T->G | INTERGENIC | None |