Detailed information of SNP:
|
SNP ID:
sf0706731375(Gbrowse)
Chromosome: chr07 Position: 6731375 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.86% | 39.14% |
| All Indica | 795 | 97.23% | 2.77% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706731375 | T->G | INTERGENIC | None |