Detailed information of SNP:
|
SNP ID:
sf0706738774(Gbrowse)
Chromosome: chr07 Position: 6738774 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 62.79% | 37.21% |
| All Indica | 794 | 98.61% | 1.39% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706738774 | T->C | INTERGENIC | None |