Detailed information of SNP:
|
SNP ID:
sf0706749443(Gbrowse)
Chromosome: chr07 Position: 6749443 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706749443 | T->C | LOC_Os07g12100(LOC_Os07g12100.1) | INTRON |