Detailed information of SNP:
|
SNP ID:
sf0706749733(Gbrowse)
Chromosome: chr07 Position: 6749733 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706749733 | C->T | LOC_Os07g12100(LOC_Os07g12100.1) | INTRON |