Detailed information of SNP:
|
SNP ID:
sf0706751677(Gbrowse)
Chromosome: chr07 Position: 6751677 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.32% | 41.68% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706751677 | C->T | LOC_Os07g12100(LOC_Os07g12100.1) | Non-Synonymous SNP |