Detailed information of SNP:
|
SNP ID:
sf0706813677(Gbrowse)
Chromosome: chr07 Position: 6813677 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.62% | 45.38% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706813677 | T->C | INTERGENIC | None |