Detailed information of SNP:
|
SNP ID:
sf0706814445(Gbrowse)
Chromosome: chr07 Position: 6814445 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1158 | 52.76% | 47.24% |
| All Indica | 565 | 11.50% | 88.50% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 50 | 38.00% | 62.00% |
| Indica I | 272 | 8.82% | 91.18% |
| Indica II | 145 | 14.48% | 85.52% |
| Indica Intermediate | 148 | 13.51% | 86.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 33 | 60.61% | 39.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706814445 | T->G | LOC_Os07g12180(LOC_Os07g12180.1) | Non-Synonymous SNP |