Detailed information of SNP:
|
SNP ID:
sf0706853127(Gbrowse)
Chromosome: chr07 Position: 6853127 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 95.91% | 4.09% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 474 | 89.24% | 10.76% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 325 | 99.08% | 0.92% |
| Tropical Japonica | 84 | 45.24% | 54.76% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706853127 | G->T | INTERGENIC | None |