Detailed information of SNP:
|
SNP ID:
sf0706862188(Gbrowse)
Chromosome: chr07 Position: 6862188 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 89.45% | 10.55% |
| All Indica | 722 | 81.44% | 18.56% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 330 | 83.94% | 16.06% |
| Indica II | 198 | 81.82% | 18.18% |
| Indica Intermediate | 194 | 76.80% | 23.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706862188 | A->G | INTERGENIC | None |