Detailed information of SNP:
|
SNP ID:
sf0706876423(Gbrowse)
Chromosome: chr07 Position: 6876423 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 51.85% | 48.15% |
| All Indica | 785 | 88.15% | 11.85% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 367 | 91.83% | 8.17% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706876423 | C->T | INTERGENIC | None |