Detailed information of SNP:
|
SNP ID:
sf0706877866(Gbrowse)
Chromosome: chr07 Position: 6877866 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 52.02% | 47.98% |
| All Indica | 792 | 88.51% | 11.49% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 373 | 91.96% | 8.04% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 206 | 77.67% | 22.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706877866 | C->T | INTERGENIC | None |