Detailed information of SNP:
|
SNP ID:
sf0706879467(Gbrowse)
Chromosome: chr07 Position: 6879467 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.81% | 46.19% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706879467 | A->G | INTERGENIC | None |