Detailed information of SNP:
|
SNP ID:
sf0706904831(Gbrowse)
Chromosome: chr07 Position: 6904831 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.64% | 46.36% |
| All Indica | 796 | 90.83% | 9.17% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706904831 | T->G | INTERGENIC | None |