Detailed information of SNP:
|
SNP ID:
sf0706908094(Gbrowse)
Chromosome: chr07 Position: 6908094 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.85% | 42.15% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706908094 | T->C | INTERGENIC | None |