Detailed information of SNP:
|
SNP ID:
sf0706931178(Gbrowse)
Chromosome: chr07 Position: 6931178 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 75.76% | 24.24% |
| All Indica | 796 | 64.32% | 35.68% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 209 | 73.68% | 26.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706931178 | G->A | INTERGENIC | None |