Detailed information of SNP:
|
SNP ID:
sf0706937586(Gbrowse)
Chromosome: chr07 Position: 6937586 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 96.19% | 3.81% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706937586 | G->T | LOC_Os07g12310(LOC_Os07g12310.1) | INTRON |