Detailed information of SNP:
|
SNP ID:
sf0706998943(Gbrowse)
Chromosome: chr07 Position: 6998943 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 90.40% | 9.60% |
| All Indica | 778 | 83.93% | 16.07% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 198 | 50.51% | 49.49% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706998943 | G->T | INTERGENIC | None |