Detailed information of SNP:
|
SNP ID:
sf0707014147(Gbrowse)
Chromosome: chr07 Position: 7014147 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 60.07% | 39.93% |
| All Indica | 754 | 35.41% | 64.59% |
| All Japonica | 496 | 90.52% | 9.48% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 360 | 28.06% | 71.94% |
| Indica II | 194 | 45.88% | 54.12% |
| Indica Intermediate | 200 | 38.50% | 61.50% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707014147 | A->G | LOC_Os07g12360(LOC_Os07g12360.1) | Synonymous |