Detailed information of SNP:
|
SNP ID:
sf0707040651(Gbrowse)
Chromosome: chr07 Position: 7040651 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 77.64% | 22.36% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 439 | 35.08% | 64.92% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 292 | 17.81% | 82.19% |
| Tropical Japonica | 85 | 68.24% | 31.76% |
| Japonica Intermediate | 62 | 70.97% | 29.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707040651 | T->C | INTERGENIC | None |