Detailed information of SNP:
|
SNP ID:
sf0707062099(Gbrowse)
Chromosome: chr07 Position: 7062099 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 94.54% | 5.46% |
| All Indica | 794 | 99.37% | 0.63% |
| All Japonica | 494 | 86.23% | 13.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 332 | 96.39% | 3.61% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707062099 | T->C | INTERGENIC | None |