Detailed information of SNP:
|
SNP ID:
sf0707065819(Gbrowse)
Chromosome: chr07 Position: 7065819 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 74.11% | 25.89% |
| All Indica | 794 | 99.37% | 0.63% |
| All Japonica | 386 | 30.05% | 69.95% |
| Aus | 57 | 42.11% | 57.89% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 254 | 27.95% | 72.05% |
| Tropical Japonica | 71 | 18.31% | 81.69% |
| Japonica Intermediate | 61 | 52.46% | 47.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707065819 | A->T | INTERGENIC | None |