Detailed information of SNP:
|
SNP ID:
sf0707076546(Gbrowse)
Chromosome: chr07 Position: 7076546 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 60.95% | 39.05% |
| All Indica | 795 | 94.09% | 5.91% |
| All Japonica | 493 | 11.97% | 88.03% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 331 | 3.93% | 96.07% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707076546 | A->G | INTERGENIC | None |