Detailed information of SNP:
|
SNP ID:
sf0707142190(Gbrowse)
Chromosome: chr07 Position: 7142190 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 72.44% | 27.56% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 495 | 27.88% | 72.12% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 11.98% | 88.02% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707142190 | C->A | INTERGENIC | None |