Detailed information of SNP:
|
SNP ID:
sf0707145265(Gbrowse)
Chromosome: chr07 Position: 7145265 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 97.44% | 2.56% |
| All Indica | 716 | 95.25% | 4.75% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 351 | 91.74% | 8.26% |
| Indica II | 168 | 100.00% | 0.00% |
| Indica Intermediate | 197 | 97.46% | 2.54% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707145265 | A->T | LOC_Os07g12520(LOC_Os07g12520.1) | INTRON |