Detailed information of SNP:
|
SNP ID:
sf0707256570(Gbrowse)
Chromosome: chr07 Position: 7256570 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 82.19% | 17.81% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 497 | 63.38% | 36.62% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 77.91% | 22.09% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707256570 | A->G | INTERGENIC | None |