Detailed information of SNP:
|
SNP ID:
sf0707314653(Gbrowse)
Chromosome: chr07 Position: 7314653 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 65.41% | 34.59% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 494 | 20.24% | 79.76% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 334 | 6.59% | 93.41% |
| Tropical Japonica | 92 | 43.48% | 56.52% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707314653 | C->A | INTERGENIC | None |