Detailed information of SNP:
|
SNP ID:
sf0707315725(Gbrowse)
Chromosome: chr07 Position: 7315725 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 54.63% | 45.37% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 493 | 1.01% | 98.99% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707315725 | G->A | INTERGENIC | None |