Detailed information of SNP:
|
SNP ID:
sf0707343920(Gbrowse)
Chromosome: chr07 Position: 7343920 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 56.75% | 43.25% |
| All Indica | 796 | 88.57% | 11.43% |
| All Japonica | 496 | 13.91% | 86.09% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707343920 | G->A | INTERGENIC | None |