Detailed information of SNP:
|
SNP ID:
sf0707345467(Gbrowse)
Chromosome: chr07 Position: 7345467 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 95.67% | 4.33% |
| All Indica | 726 | 92.42% | 7.58% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 338 | 92.60% | 7.40% |
| Indica II | 198 | 91.92% | 8.08% |
| Indica Intermediate | 190 | 92.63% | 7.37% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707345467 | T->A | INTERGENIC | None |