Detailed information of SNP:
|
SNP ID:
sf0707362166(Gbrowse)
Chromosome: chr07 Position: 7362166 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 57.46% | 42.54% |
| All Indica | 796 | 86.56% | 13.44% |
| All Japonica | 496 | 15.52% | 84.48% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 372 | 90.59% | 9.41% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707362166 | T->C | INTERGENIC | None |