Detailed information of SNP:
|
SNP ID:
sf0707362453(Gbrowse)
Chromosome: chr07 Position: 7362453 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 55.34% | 44.66% |
| All Indica | 787 | 23.76% | 76.24% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 366 | 23.50% | 76.50% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707362453 | G->A | INTERGENIC | None |