Detailed information of SNP:
|
SNP ID:
sf0707391583(Gbrowse)
Chromosome: chr07 Position: 7391583 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 59.89% | 40.11% |
| All Indica | 783 | 92.21% | 7.79% |
| All Japonica | 495 | 14.55% | 85.45% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 363 | 97.52% | 2.48% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 80.86% | 19.14% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707391583 | C->T | LOC_Os07g12880(LOC_Os07g12880.1) | Non-Synonymous SNP |