Detailed information of SNP:
|
SNP ID:
sf0707462841(Gbrowse)
Chromosome: chr07 Position: 7462841 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 54.35% | 45.65% |
| All Indica | 793 | 90.42% | 9.58% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0707462841 | C->T | LOC_Os07g13010(LOC_Os07g13010.1) | Synonymous |